Rice-Wheat System Sustainability
Concerns and Soil-Borne Pathogens
By Iftikhar Ahmad
Shazia Iram
F1. Deputy Director General, Institute of Plant and
Environmental Protection (IPEP), National Agriculture Research
Centre (NARC), Islamabad.
2. Assistant Professor, Department of Mycology and Plant
Pathology, University of the Punjab, Lahore.
Rice and wheat are grown in a continuous in Indo Pak on more
than 12 million hectares stretching across Bangladesh, India,
Nepal and Pakistan. Concerns have emerged in the recent past
regarding the sustainability of the rice-wheat system.
The
productivity of this system is reported to be in stagnation or
to have declined in many areas, especially where a continuous
rice-wheat rotation predominates and system diversity is low.
Biotic, abiotic and social impediments are recognized to be
largely responsible in reducing the farm income and
threatening the food security. Because rice and wheat are
grown under widely different tillage practices, the nature of
biotic and abiotic issues is very complex.
Rice grows well on puddled compacted soil, whereas wheat grows
best on well-drained soils. The hardpan developed with
puddling operation is important for water retention and weed
control in rice, but compacted soil creates problems of water
logging for wheat. In addition to this, the traditional land
preparation after rice harvest results in later wheat sowing
dates than optimum.
The traditional cultural cultivation practices are also
harmful for rice-wheat cropping system. Considerable attention
is being paid to abiotic constraints like soil fertility,
water management and tillage but less on the biotic obstacles
particularly the soil-borne pathogens.
Soil-borne pathogens may limit nutrient uptake, internal water
potential, photosynthesis and increase respiration, factors
that are important for the productivity of a crop. A complex
of soil-borne organisms, particularly fungi, cause diseases.
The soil-borne fungi survive from season to season on host
crop debris buried in soil. Soil-borne fungi are difficult to
eliminate since they produce resting structures like sclerotia,
chlamydospores etc., which are well adapted to survive for
long periods under adverse environmental conditions.
The primary disease cycle is initiated by resting structures,
borne on infested plant residues. The secondary infection is
spread usually by conidia, which can be transmitted very far
by wind. Further infections continue throughout the growing
season with new spores being produced on plant parts as they
mature.
Patchy emergence is usually the first indication that damage
has occurred. Infections start on the roots and sub-crown
internodes and move to the leaves. Seedlings may die before or
soon after emergence even though they only show slight damage.
But these pathogens are unnoticed in Pakistan.
These pathogens may infect the underground parts of rice and
wheat. It was reported earlier typically, plants are not
killed by fungal infection, instead plants affected by root
rot or foliar blight may reduce tillering, produce shriveled
grains or small head depending upon time and severity of
infection.
Rice Crop and Soil-Borne Fungi
Rice one of the leading food crops of the world, is an
important staple food and cash crop of Pakistan. Globally,
rice is the most important crop in terms of its contribution
to human diet and value of production. Rice provides between
35% and 80% of the calories consumed by 3.3 billion people in
Asia, and 8% of food energy for 1 billion people in
sub-Saharan Africa, Latin America and the Caribbean. However,
although rice protein ranks high in nutritional quality among
cereals, protein content is modest in rice. Rice also provides
minerals, vitamins, and fiber, although all constituents
except carbohydrates are reduced by milling.
The rice crop is subjected to more than forty diseases, which
are one of the reasons, for low yields of rice in the world
including Pakistan. The diseases may appear at any stage of
the growth and development of plant, attacking the seed sown,
root system, foliage, stalk, leaf sheath, inflorescence and
even the developing grain. Fungi can cause different
infectious diseases. In the following some of the most
important soil-borne fungi are presented.
The fungus Bipolaris oryzae causes brown spot and persists on
infected rice seed and probably infected crop debris. It has
traditionally been a seedling disease problem but can also
attack the leaves and panicles of rice plants. The fungus has
air-borne spores that infect the plant when free moisture is
available. Brown spot lesions are occasionally confused with
leaf blast lesions .
Table. 1.1 Most important Fungal Diseases in Rice (Hollier et
al., 1993).
Diseases
|
Fungi
|
|
Bipolaris oryzae |
Sheath spot |
Rhizoctonia solani |
Seedling blight |
Rhizoctonia solani |
Blast |
Pyricularia oryzae |
Stem rot |
Sclerotium
oryzae |
Root rots |
Fusarium
spp. |
Leaf scald |
Microdochium oryzae
|
Black kernel |
Curvularia lunata |
Crown sheath rot |
Gaeumannomyces graminis
|
Eyespot |
Drechslera gigantea |
False smut |
Ustilago noidea virens
|
Kernel smut |
Tilletia barclayana
|
Sheath spot |
Rhizoctonia
oryzae |
Stackburn
|
Alternaria padwickii |
|
Sheath spot (Rhizoctonia oryzae)
disease is similar to the early stages of sheath blight. Small
sclerotia initiate the disease on the outermost leaf sheath. A
reddish-brown lesion develops on the plant near the waterline.
During internode elongation, the sheath spot may be pushed up
above the waterline because of this new growth. The sheath
spot fungus does not develop on the leaf blades, as is the
case with sheath blight. Rather it remains on the outer sheath
only. Sometimes the fungus will cause a yellowing of the leaf
attached to the sheath it has infected. Some reduction in
yield may occur in tillers that are infected; however, it is
generally minor and few tillers are affected to result in a
significant yield loss.
Sheath blight of rice caused by Rhizoctonia solani, has become
one of the more important diseases in several regions during
the last two decades. In a first phase, pathogen induces
lesions on the base of the leaf sheaths, which later coalesce
and progress to the upper parts of the rice plant. In a second
phase, the disease then spreads in the crop by means of
mycelial strands growing from primary or secondary lesions to
healthy tissues of the same or adjacent plants in which these
mycelial strands establish new infections.
Blast (Pyricularia oryzae) disease can cause serious losses to
susceptible varieties. Depending on the part of the plant
affected, the disease is often called leaf blast, rotten neck,
or panicle blast. The shape and color of the spots may vary
and resemble those of the brown leaf spot disease. Blast
differs from brown leaf spot in that it causes longer lesions
and develops more rapidly. The blast fungus frequently attacks
the node at the base of the panicle and the branches of the
panicle. The fungus may also attack the nodes or joints of the
stem. Blast generally occurs scattered throughout a field
rather than in a localized area of the field. Spores of the
fungus are produced in great abundance on blast lesions and
can become airborne, disseminating the fungus a considerable
distance.
Stem rot (Sclerotium oryzae) becomes most noticeable in rice
fields during the later stages of maturity. The disease occurs
in circular to irregular areas in fields and causes premature
death and lodging of the plants. The fungus attacks the rice
plant near the water line usually during late tillering or
early reproductive stages of growth. Plants infected early
yield poorly. Diagnosis is confirmed by obtaining an infected
plant, splitting the base of the stem, and observing the
presence of tiny, black sclerotia in internal stem tissues.
Wheat Crop and Soil-Borne Fungi
Wheat a cereal grass of the Gramineae family and the genus
Triticum is the world's largest cereal-grass crop. It has been
cultivated for at least 6,000 years and its status as a staple
crop ranks second to rice. Unlike other cereals, wheat
contains a high amount of gluten, the protein that provides
the elasticity necessary for excellent bread making. Over
30,000 varieties of wheat exist between the two major species,
bread wheat (Triticum aestivum) and durum wheat (Triticum
durum). Wheat grain, a major source of energy in human diet,
is higher in protein content than almost all other cereals.
All parts of the wheat plant are subject to diseases and one
or more diseases can occur on virtually every plant and in
every field. In Pakistan, 50 diseases of wheat are reported
and some of them are important economically. These are caused
by parasitic bacteria, fungi and viruses.
Pyrenophora tritici-repentis is pathogenic fungus and the
causal agent of the wheat leaf spot disease known as tan spot.
This disease occurs in all major wheat growing areas of the
world Tan spot on wheat can cause significant losses under
suitable epidemic conditions. It is dependent on the stage of
leaf damage and the loss of assimilation leaf area. Losses are
manifested in total yield, kernel weight and number of grains
per head.
Spot blotch and leaf blotch of wheat (Triticum aestivum) is
caused by Bipolaris sorokiniana an important pathogen that
limits production in many nontraditional hot, humid
wheat-producing areas of Asia, Africa and South America. The
primary inoculum of the fungi comes from several sources such
as weed hosts, soil, crop debris, and uncultivated plants.
Bipolaris sorokiniana can attack seedlings, roots, leaves,
nodes, spikes and grains during various stages of plant
development . It can cause pre-and post-emergence damping off,
seedling blight, leaf spot and spike blight.
Many different fungal pathogens are reported to cause leaf
spots and blight. These include 12 species of Helminthosporium
and Alternaria. Helminthosporium spp and Alternaria alternata
are the most important pathogens of wheat.
Table 1.2 Most important Fungal Diseases in Wheat (Wiese et
al., 2000).
Wheat Diseases
|
Fungi
|
|
Alternaria triticina
|
Anthracnose |
Colletotrichum graminicola
|
Ascochyta leaf
spot |
Ascochyta tritici |
Aureobasidium
decay |
Microdochium bolleyi
|
Black head molds
and Sooty molds |
Alternaria
spp. |
Cephalosporium
stripe |
Cephalosporium gramineum
|
Common bunt |
Tilletia caries
|
Common root rot |
Bipolaris sorokiniana
|
Cottony snow mold |
Coprinus psychromorbidus |
Crown rot and foot
rot |
Fusarium graminearum
|
|
Rhizoctonia solani
|
|
Bipolaris sorokiniana |
|
Pyrenophora tritici-repentis
|
Stripe rust |
Puccinia striiformis
|
Storage molds |
Penicillium
and Aspergillus spp. |
Stem rust (Black
rust) |
Puccinia tritici
|
|
Another wide spread soil-borne pathogen associated with wheat
in tropical environments is Rhizoctonia solani Kuhn.
Rhizoctonia solani causes sheath blight (sharp eye spot), root
rot and a pre and post emergence damping off. Infection of
young plants results in a wilting and death. Infected tissue
becomes discolored and irregular scald or eye spot patches
develop on the stem, leaf sheaths and occasionally on the
leaves. The fungus can survive on crop debris and also as
sclerotia but this may not be of great importance in the
tropical environments. Dry soil conditions and temperature
around 30C favoured infections.
What Happens with Pathogens During Crop Rotation?
Most fungi feed on decaying organic matter such as dead roots,
leaves, and stems. They break down dead organic matter into
useful minerals and other nutrients that are taken up by plant
roots. Relatively few of the estimated two hundred thousand
species of fungi attack living plants, and then only when
temperature and moisture conditions are favorable. Plant
pathogenic fungi penetrate into leaves, stems, and roots
through wounds and natural openings or by forcing their way
directly through the plant's protective epidermis (outer
"skin"). After growing for several days, weeks, or even years,
most disease-causing fungi give rise to spores or
spore-producing bodies. Some spores may appear as mold growth
on the surface of buds, leaves, and shoots (as in the case of
powdery and downy mildews, sooty molds, blights, and many
rusts); others are borne in speck-sized, fungus-fruiting
bodies embedded in diseased leaf tissue or in stems. Certain
fungi may form decay resistant over wintering structures
(i.e., sclerotia) that allow them to survive in the soil from
season to season. The microscopic spores are easily
transported to other plants by air currents, splashing rains,
insects, mites, birds, plant parts, and worker's hands,
clothing, and equipment. Fungi cause most infectious plant
diseases including all rusts, sooty molds, mildews, blights,
scabs, stem blights, wilts, galls, and some other diseases.
Crop rotation is a wise practice for many reasons including
disease avoidance. Most pathogens survive in crop residues,
but only for a limited time, and most pathogens do not infect
multiple crops. Therefore, their populations and the risk of
disease can be decreased by crop rotation. Crop rotation is
effective for most diseases, but a few diseases (rust,
Stewarts wilt of corn, yellow dwarf of wheat and oats) do not
survive this way, so crop rotation will not affect them.
Sclerotia sclerotiorum survives primarily as sclerotia in
soil. Sclerotia are distributed throughout the plow layer of
the soil and survive in winter in soil and germinate if
positioned near or at the soil surface when conditions are
right in the spring and summer. Sclerotia are long-lived and
essentially impossible to totally eliminate from a field as
long as a host crop is planted in intervals of 5 years or
less. Choices in crop rotation and crop sequences with
non-hosts can be made that contribute to the steady depletion
of sclerotia in the soil. In practice crop rotation of two
years is usually sufficient to eliminate most disease
problems. Crop rotation control disease by providing
sufficient time between susceptible crops for the disease
organism (fungi) to die out. When the population of the
disease organism is reduced to such low levels that disease is
unlikely, then crop be grown in the field again. Most crops
(corn, soybean, alfalfa and other hay crops, oats, barley,
sugar beets, Chickpea, potatoes and vegetable crops) are
suitable for the rotation.
Fungal Species that Infect Both Rice and Wheat
Some fungal pathogens are specific for rice or wheat. There
are number of species that cause similar diseases in both rice
and wheat. However, root rot in wheat and rice is caused by
various Fusarium spp. Rhizoctonia solani or Rhizoctonia oryzae,
Bipolaris sorokiniana or Bipolaris sativum, Alteraria
alternata, Helminthosporium spp, Curvularia spp and the
oomycetes Pythium spp, and Phytopthora infestans. Other sheath
diseases in rice are caused by Sclerotium oryzae but in wheat
root rot by Sclerotium rolfsii. In rice and wheat crops
Rhizoctonia oryzae and Rhizotonia solani can cause root rot.
Brown spot in rice is caused by Cochliobolus miyabeanus
whereas in wheat foliar spots are caused by Cochliobolus
sativus. There are certain fungi, which have the potential to
attack both rice and wheat. Rhizoctonia solani also causes
sheath blight in rice and is also known to be responsible for
foot rot of wheat. Although strains of the same fungus species
cause disease in wheat and rice, little is known about whether
particular strains infect both wheat and rice. This question
is very important in the context of rice-wheat cultivation
system.
Complexity of Soil-borne Pathogens, their Aggressiveness and
Genetic
Variation: Problem for their Management in Rice-Wheat System
The soil-borne fungi have a wide host range of plants and
probably survive mainly by means of perithecia and ascospores
on crop stubble, as well as by asexual spores through growth
in soil. Some of them being common both on rice and wheat are
able to perpetuate more easily and their inoculum levels are
rapidly built up. As such these pathogens are difficult to
manage because of their high survival capacity. Of the
different management strategies cultural methods including
rotation are more useful in reducing inoculum level but are
often difficult to put into operation for small farmer
particularly. Chemical methods, through effective are
hazardous for health and environment but also very expensive.
Therefore, the most effective disease management approach is
the use of genetic resistance. The use of a particular genetic
control strategy is dependent on the kind of resistance
available. Resistance of host plant to certain pathogen is
because of the host characteristics as well as that of the
pathogen. Different plants are resistant to certain pathogens
for various reasons, but the most important is the genetic
variation in host plant which enables the same host plant to
escape the attack of the pathogen due to presence of one or
more disease resistance gene while other become susceptible to
that pathogen. Similarly genetic variations also exist in
pathogen population making it either aggressive or
non-aggressive against a certain host plant. Change in
pathogen variability occurs rapidly because of their faster
reproduction and more frequently mutating ability. Therefore
it is essential to understand the variability in the pathogen
in relation to the host resistance for a successful breeding
programme.
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